From Ambon to Poso: comparative and evolutionary aspects of local jihad in Indonesia

This article looks at the first two local jihads in Indonesia after the fall of President Suharto: the 1999-2005 Ambon jihad and the 2000-7 Poso jihad. Both jihads were launched by Javanese mujahidin in response to the eruption of Christian-Muslim communal violence. The Ambon jihad was characterized by disagreement, infighting and lack of strategic direction, while the Poso jihad was comparatively better led and linked to the broader goals of establishing an Islamic state in Indonesia. This article explores the differences between the two jihads and asks to what extent the better organization of the Poso jihad was the result of lessons learnt from the “mistakes” of the Ambon jihad. The article advances two arguments. First, the Ambon jihad was undermined by the lengthy debate within Jemaah Islamiyah (JI) on how to respond to the Ambon conflict as well as by the shifting dynamics between JI, Mujahidin KOMPAK and Laskar Jihad. Second, that the Poso jihad was more organized than the Ambon one because JI’s leadership had a more comprehensive approach to the Poso jihad; because JI and Mujahidin KOMPAK had learnt from the mistakes of the Ambon jihad in the areas of leadership, training and using local jihads to achieve national aims; and because the intra- and inter-mujahidin dynamics and with it the “state of jihad” had evolved between February 1999 and September 2000

Why they join: pathways into Indonesian jihadi organisations

Why do Indonesian Muslims join Islamist extremist groups? This article explores four pathways to entry into Indonesian militant groups: study groups, local conflict, kinship and schools. It argues that within all four of these pathways, social bonds and relationships are the common thread both in encouraging entry as well as in fostering commitment. Specifically, these relationships contribute to the formation and eventual consolidation of the identity as a member of the jihadi group through regular participation in activities, attending meetings, narrowing the circle of friends to those within the group, and participating in increasingly risky and possibly violent activities together. Drawing on original fieldwork including 49 interviews with current and former members of Jemaah Islamiyah, Mujahidin KOMPAK, Darul Islam, Mujahidin Tanah Runtuh, Indonesia’s pro-ISIS network and other jihadist groups as well as 57 depositions and court documents, this article explores the development and evolution of these pathways and how relational ties play a role in each

Militant Islam in Southeast Asia: new insights into jihad in Indonesia, Malaysia and the Philippines

After more than two decades of existence, Contemporary Southeast Asia (CSEA) has entered a new phase of specialization to reflect more directly the changing priorities of the Institute of Southeast Asian Studies (ISEAS) as well as to cater to an increasing demand among our subscribers for a focus on issues related to domestic politics, international affairs, and regional security. This primary emphasis on political developments, socioeconomic change and international relations is in keeping with the rapid advances in the field of strategic studies concerning not just Southeast Asia but, indeed, the larger Asia-Pacific environment. Contemporary Southeast Asia comprises up-to-date analyses of important trends and events as well as authoritative and original contributions from leading scholars and observers on matters of current interest. It is also the policy of the Editorial Committee of CSEA to produce special issues in order to focus attention either on particular national situations or on major strategic trends in both Southeast Asia and the wider Asia-Pacific region. Contemporary Southeast Asia is published three times a year, in April, August, and December

The “ethnic” in Indonesia’s communal conflicts: violence in Ambon, Poso, and Sambas

This article looks at the communal violence in Ambon, Poso and Sambas in post-Suharto Indonesia from a comparative perspective. It explores why Ambon and Poso were seen as religious while Sambas was seen as ethnic despite the fact that in all three conflicts different religions and ethnicities fought each other. Examining the ‘ethnic’ elements, this article advances three arguments: First, that the Poso and Ambon conflicts were no less ethnic than the Sambas conflict as they had similar ‘ethnic causes’. Second, that the religious narrative dominated in Ambon and Poso because it reflected the Islamic resurgence in Indonesia since the 1990s while the narrative in Sambas reflected that it was the latest round of a pre-existing anti-Madurese conflict which had already been ‘defined’ as ‘ethnic’. Third, that the narratives were framed strategically, thus influencing the trajectory of the conflict but also responding to it

Making jihadis, waging jihad: transnational and local dimensions of the ISIS phenomenon in Indonesia and Malaysia

This article examines the ISIS phenomenon in Indonesia and Malaysia. It aims to explain how, where, and why the transnational and local intersect as well as the role of religion, particularly in the ideological narratives and recruitment strategies of local jihadi groups. At the heart of this analysis is the question to what extent Indonesians and Malaysians were lured into joining ISIS as a result of its "universal" ideology and global recruitment strategy or whether they were instead propelled by local Indonesian and Malaysian dynamics into Syria and into "importing" and "indigenising" ISIS to advance their own agendas. The article argues that the potency and appeal of the extremist narrative of ISIS derives from how it animates and feeds off prevailing debates within Indonesia and Malaysia. These debates revolve around issues such as the nature of Muslim identity and what it means to be a "good Muslim", the place of Islamic law in society, relations within the ummah as well as with non-Muslims, and Islamic eschatology. While there is clearly a transnational dimension, the motivations for Southeast Asians to sympathize with or join the Syrian jihad and their engagement with ISIS are ultimately the product of local Indonesian and Malaysian dynamics rather than the "lure" of ISIS per se. This article thus contributes to the broader scholarly debate on how "global" the global jihad actually is and the phenomenon of "glocalisation"

Natural resource wars in the shadow of the future: Explaining spatial dynamics of violence during civil war

Previous studies on natural resources and civil wars find that the presence of natural resources increases both civil conflict risk and duration. At the same time, belligerents often cooperate over resource extraction, suggesting a temporal variation in the contest over this subnational space. This study argues that parties fight over natural resources primarily when they expect that the conflict is about to end, as the importance of controlling them increases in the post-conflict setting. In contrast, belligerents that anticipate a long war have incentives to avoid fighting near natural resources since excessive violence will hurt the extraction, trade, and subsequent taxation that provide conflict actors with income from the resource. We test our argument using yearly and monthly grid-cell-level data on African civil conflicts for the period 1989–2008 and find support for our expected spatial variation. Using whether negotiations are underway as an indicator about warring parties’ expectations on conflict duration, we find that areas with natural resources in general experience less intense fighting than other areas, but during negotiations these very areas witness most of the violence. We further find that the spatial shift in violence occurs immediately when negotiations are opened. A series of difference-in-difference estimations show a visible shift of violence towards areas rich in natural resources in the first three months after parties have initiated talks. Our findings are relevant for scholarship on understanding and predicting the trajectories of micro-level civil conflict violence, and for policymakers seeking to prevent peace processes being derailed

Patient Age, Sex, and Inflammatory Bowel Disease Phenotype Associate With Course of Primary Sclerosing Cholangitis

BACKGROUND & AIMS: Primary sclerosing cholangitis (PSC) is an orphan hepatobiliary disorder associated with inflammatory bowel disease (IBD). We aimed to estimate the risk of disease progression based on distinct clinical phenotypes in a large international cohort of patients with PSC. METHODS: We performed a retrospective outcome analysis of patients diagnosed with PSC from 1980 through 2010 at 37 centers in Europe, North America, and Australia. For each patient, we collected data on sex, clinician-reported age at and date of PSC and IBD diagnoses, phenotypes of IBD and PSC, and date and indication of IBD-related surgeries. The primary and secondary endpoints were liver transplantation or death (LTD) and hepatopancreatobiliary malignancy, respectively. Cox proportional hazards models were applied to determine the effects of individual covariates on rates of clinical events, with time-to-event analysis ascertained through Kaplan-Meier estimates. RESULTS: Of the 7121 patients in the cohort, 2616 met the primary endpoint (median time to event of 14.5 years) and 721 developed hepatopancreatobiliary malignancy. The most common malignancy was cholangiocarcinoma (n = 594); patients of advanced age at diagnosis had an increased incidence compared with younger patients (incidence rate: 1.2 per 100 patient-years for patients younger than 20 years old, 6.0 per 100 patient-years for patients 21-30 years old, 9.0 per 100 patient-years for patients 31-40 years old, 14.0 per 100 patient-years for patients 4150 years old, 15.2 per 100 patient-years for patients 51-60 years old, and 21.0 per 100 patient-years for patients older than 60 years). Of all patients with PSC studied, 65.5% were men, 89.8% had classical or large-duct disease, and 70.0% developed IBD at some point. Assessing the development of IBD as a time-dependent covariate, Crohn's disease and no IBD (both vs ulcerative colitis) were associated with a lower risk of LTD (unadjusted hazard ratio [HR], 0.62; PPeer reviewe

Cryptococcus: from environmental saprophyte to global pathogen.

Cryptococcosis is a globally distributed invasive fungal infection that is caused by species within the genus Cryptococcus which presents substantial therapeutic challenges. Although natural human-to-human transmission has never been observed, recent work has identified multiple virulence mechanisms that enable cryptococci to infect, disseminate within and ultimately kill their human host. In this Review, we describe these recent discoveries that illustrate the intricacy of host-pathogen interactions and reveal new details about the host immune responses that either help to protect against disease or increase host susceptibility. In addition, we discuss how this improved understanding of both the host and the pathogen informs potential new avenues for therapeutic development

Rare and low-frequency coding variants alter human adult height

Height is a highly heritable, classic polygenic trait with ~700 common associated variants identified so far through genome - wide association studies . Here , we report 83 height - associated coding variants with lower minor allele frequenc ies ( range of 0.1 - 4.8% ) and effects of up to 2 16 cm /allele ( e.g. in IHH , STC2 , AR and CRISPLD2 ) , >10 times the average effect of common variants . In functional follow - up studies, rare height - increasing alleles of STC2 (+1 - 2 cm/allele) compromise d proteolytic inhibition of PAPP - A and increased cleavage of IGFBP - 4 in vitro , resulting in higher bioavailability of insulin - like growth factors . The se 83 height - associated variants overlap genes mutated in monogenic growth disorders and highlight new biological candidates ( e.g. ADAMTS3, IL11RA, NOX4 ) and pathways ( e.g . proteoglycan/ glycosaminoglycan synthesis ) involved in growth . Our results demonstrate that sufficiently large sample sizes can uncover rare and low - frequency variants of moderate to large effect associated with polygenic human phenotypes , and that these variants implicate relevant genes and pathways